I have seen this several times, even with APs that live the in same series and standard. I will have every setting within the AP be coordinated and in line, but applied changes will either overwrite the configuration of one or two, or will overwrite the configuration of the AP in a different series/standard.

While I usually manage to make it work by making adjustments manually within the AP itself, when larger sites come into the picture this can be excessively tedious. I am wondering if adjusting this is in the works in the future to make the "apply changes" more effective and less detrimental when used on a cloud management level.